Perhaps people shouldn't get upset for being called out on such a position, then?
Excuse me? I will certainly get upset when someone accuses me of dishonesty where there is none.
That's true. However, the intellectual dishonesty comes from the burden of proof part, which should be very clear to scientist.
There
is no burden of proof. Many beliefs cannot be explained rationally, and cannot be proven. By definition you cannot prove the existence of an omnipotent entity that can do whatever the hell it wants because there is no way to test it. A test requires a frmaework of rules and patterns that must be followed. If the god I am trying to prove exists operates that framework anyway, how can I judge the results of any test? He could have just messed with my test to make himself appear to be non-existent. (According to some, he does that anyway by making the world appear to be billions of years old when it's only 6000. I don't think he is, and i wouldn't want to worship any such intentionally deceitful entity anyway, but I have no way to prove that he isn't doing that, have I?) But equally you cannot disprove it either. That
only leaves belief. Whenever it comes to questions of religion and gods, belief is all we have and all we can have. Every single person, Christian, Buddhist, Hindu or atheist is operating on a belief system because there is no other way to work in such an area. The only intellectual dishonesty comes from claiming that one's beliefs in the matter are rational. I have not done so, Andromeda has not done so, and gillianren has openly stated her beliefs are irrational. Where is this dishonesty you crow about?
We are not talking about why I think that Repo Man is so bad that it's sort of good; I'm not basing my world on such a trivial irrationality, and it doesn't affect others.
Many people's belief in their god or gods does not affect others significantly either. You are taking the worst excesses of religious oppression and tarring all religions and religious people with the same brush.